Integrated Meta-omic Pipeline
N.B. This is the website of the Docker-based version of IMP. For more information on the conda-based version which we are currently actively working on, please visit https://imp.lcsb.uni.lu.
IMP, the Integrated Meta-omic Pipeline is a reproducible and
modular pipeline for large-scale standardized integrated analysis of coupled metagenomic and
metatranscriptomic data. IMP incorporates robust read preprocessing, iterative co-assembly
of metagenomic and metatranscriptomic data, analyses of microbial
community structure and function as well as genomic signature-based visualizations.
As an added functionality, IMP also performs either single-omic metagenomic or metatranscriptomic analyses.
Preprocessing and quality control
Basics statistics about your data, such as quality control, coverage, distribution of mappable reads, etc.
Integrated visualisations
Integrated visualisations of the assembly using Vizbin maps. Aggregation of annotation results using Krona charts.
Workflow visualisation
Conveniently track the workflow.