COBREXA.jl: constraint-based reconstruction andexascale analysis

Miroslav Kratochvíl, Laurent Heirendt, St. Elmo Wilken, TaneliPusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst, Venkata P. Satagopam, Oliver Ebenhöh, Reinhard Schneider, ChristopheTrefois, and Wei Gu

source code

COBREXA.jl source code is available from GitHub.

SBML.jl source code is available from GitHub.

DistributedData.jl source code is available from GitHub.

documentation

The documentation of COBREXA.jl is available here.

benchmarks

The benchmark scripts are available here.

supplementary information

A comparison of CPU performance used for the difference estimate in supplementary section 3.3 is available at cpubenchmark.net.

Metadata

Date	2021-05-17
DOI	doi:10.17881/zkcr-bt30
DOI type	Manuscript
Manuscript	COBREXA.jl: constraint-based reconstruction andexascale analysis