Integrated Meta-omic Pipeline

IMP, the Integrated Meta-omic Pipeline is a reproducible and modular pipeline for large-scale standardized integrated analysis of coupled metagenomic and metatranscriptomic data. IMP incorporates robust read preprocessing, iterative co-assembly of metagenomic and metatranscriptomic data, analyses of microbial community structure and function as well as genomic signature-based visualizations. As an added functionality, IMP also performs either single-omic metagenomic or metatranscriptomic analyses.

Preprocessing and quality control

Basics statistics about your data, such as quality control, coverage, distribution of mappable reads, etc.

Integrated visualisations

Integrated visualisations of the assembly using Vizbin maps. Aggregation of annotation results using Krona charts.

Workflow visualisation

Conveniently track the workflow.

Copyright © Université du Luxembourg 2015. All rights reserved.